User:Raphael Chaleil

The account of this former contributor was not re-activated after the server upgrade of March 2022.

About me

I am a Senior Scientific Officer in a Cancer Research charity in the United Kingdom. I have a degree in Biochemistry, Molecular and Cellular Biology from University of Tours (France), a Master of Science in Molecular Modelling and Bioinformatics from Birkbeck College (part of University of London) and a PhD in Bioinformatics from Imperial College London. My expertise is mainly in protein structure and sequence analysis. I have extensive experince in programming, mostly in C++ and Perl, I also do a lot of system administration on Linux servers and workstations. I am fluent in French and English.

List of Publications

Alves R., Chaleil R.A.G and Sternberg M.J.E. Evolution of Enzymes in metabolism: a network perspective Journal of Molecular Biology, 320(4):751-770, Jul. 2002

Bang J.W., Chaleil R.A.G and Williamson J. Two stage Bayesian networks for metabolic network prediction Proceedings of the workshop on quanlitative and model based reasoning in biomedecine 9th Conference on Artificial Intelligence in Medicine Europe, Cyprus, Oct. 2003.

Tamaddoni-Nezhad A., Chaleil R.A.G., Kakas A.C. and Muggleton S.H. Abduction and induction for learning models of inhibition in metabolic networks. Machine Learning and Applications, 2005. Proceedings. Fourth International Conference on Volume , Issue , 15-17 Dec. 2005 Page(s): 6 pp. - Digital Object Identifier 10.1109/ICMLA.2005.6

Tamaddoni-Nezhad A., Chaleil R.A.G., Kakas A.C. and Muggleton S.H. Application of abductive ILP to learning metabolic network inhibition from temporal data. Machine Learning, 64:209-230, 2006. DOI: 10.1007/s10994-006-8988-x.

Tamaddoni-Nezhad A., Chaleil R.A.G., Kakas A.C., Sternberg M.J.E., Nicholson J. and Muggleton S. Modelling the effects of toxins in metabolic networks. IEEE Eng. Med. Biol. Mag., 26(2):37-46. Mar-Apr 2007

Krol M., Chaleil R.A.G., Tournier A.L. and Bates P.A. Implicit flexibility in protein docking: Cross-docking and local refinement. Proteins, Aug 2007